grConverter: convert a GRanges to a JSON query for mongodb
In TxRegInfra: Metadata management for multiomic specification of transcriptional regulatory networks
Description
Usage
Arguments
Value
Examples
Description
convert a GRanges to a JSON query for mongodb
Usage
1
2
grConverter(queryGRange, cfields = c(chrom = "chrom", start =
"chromStart", end = "chromEnd"))
Arguments
queryGRange
a GRanges-class instance of length 1
cfields
a named character(3) vector with names 'chrom', 'start',
'end'; the element values will be used to name document fields in the query
Value
a JSON document generated by rjson::toJSON
Examples
1
2
gr = GenomicRanges::GRanges('chr1', IRanges(1,25000))
grConverter(gr, cfields=c(chrom='chr', start='start', end='end'))
TxRegInfra documentation built on Nov. 8, 2020, 5:15 p.m.
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Description Usage Arguments Value Examples
Description
convert a GRanges to a JSON query for mongodb
Usage
1 2 | grConverter(queryGRange, cfields = c(chrom = "chrom", start =
"chromStart", end = "chromEnd"))
|
Arguments
queryGRange |
a |
cfields |
a named character(3) vector with names 'chrom', 'start', 'end'; the element values will be used to name document fields in the query |
Value
a JSON document generated by rjson::toJSON
Examples
1 2 | gr = GenomicRanges::GRanges('chr1', IRanges(1,25000))
grConverter(gr, cfields=c(chrom='chr', start='start', end='end'))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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