API for XBSeq
Test for differential expression for RNA-seq data
| Global functions | |
|---|---|
| .onAttach | Source code |
| Background | Man page |
| ExampleData | Man page |
| Loglikhood | Source code |
| Loglikhood_NB | Source code |
| MAplot | Man page Source code |
| Observed | Man page |
| XBSeq | Man page Source code |
| XBSeq-package | Man page |
| XBSeqDataSet | Man page Source code |
| XBSeqDataSet-class | Man page |
| XBSeqTest | Man page Source code |
| XBSeqTestForMatrices | Source code |
| XBplot | Man page Source code |
| adjustScv | Source code |
| apaUsage | Man page Source code |
| conditions | Man page |
| conditions,XBSeqDataSet-method | Man page |
| conditions<-,XBSeqDataSet-method | Man page |
| counts | Man page |
| counts,XBSeqDataSet-method | Man page |
| dispEst | Man page |
| dispEst,XBSeqDataSet-method | Man page |
| dispEst<- | Man page |
| dispEst<-,XBSeqDataSet-method | Man page |
| dispTable | Man page |
| dispTable,XBSeqDataSet-method | Man page |
| estimateRealCount | Man page |
| estimateRealCount,XBSeqDataSet-method | Man page |
| estimateSCV | Man page |
| estimateSCV,XBSeqDataSet-method | Man page |
| estimation_param_PoissonNB_MLE | Source code |
| estimation_param_PoissonNB_MLE_NB | Source code |
| exactTestBetaApprox | Source code |
| fitInfo | Man page |
| fitInfo,XBSeqDataSet-method | Man page |
| genelength | Man page |
| getCountParams | Source code |
| getCountParamsPooled | Source code |
| getSCV | Source code |
| getSignalVars | Man page Source code |
| insertRow | Source code |
| parametricscvFit | Source code |
| plotSCVEsts | Man page Source code |
| predict_helper | Source code |
| prepareScvBiasCorrectionFits | Source code |
| scvBiasCorrectionFits | Man page |
