conditions <- factor(c(rep('C1',3), rep('C2', 3)))
XB <- XBSeqDataSet(Observed, Background, conditions)
XB <- estimateRealCount(XB)
XB <- estimateSizeFactors(XB)
expect_error(XBSeqTest(XB, levels(conditions)[1L], levels(conditions)[2L] , method = 'NP'))
XB <- estimateSCV(XB)
expect_warning(XBSeqTest(XB, levels(conditions)[1L], levels(conditions)[2L], method = 'MLE'))

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XBSeq documentation built on Nov. 8, 2020, 11:12 p.m.