tests/testthat/test_estimateSCV.R

data("ExampleData")
conditions <- factor(c(rep('C1',2), rep('C2', 2)))
XB <- XBSeqDataSet(Observed[,1:4], Background[,1:4], conditions)
XB <- estimateRealCount(XB)
XB <- estimateSizeFactors(XB)
expect_warning(estimateSCV(XB, method='per-condition', sharingMode='gene-est-only', fitType='local'))

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XBSeq documentation built on Nov. 1, 2018, 2:24 a.m.