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tests/testthat/test_estimateSCV.R
In XBSeq: Test for differential expression for RNA-seq data
data("ExampleData")
conditions <- factor(c(rep('C1',2), rep('C2', 2)))
XB <- XBSeqDataSet(Observed[,1:4], Background[,1:4], conditions)
XB <- estimateRealCount(XB)
XB <- estimateSizeFactors(XB)
expect_warning(estimateSCV(XB, method='per-condition', sharingMode='gene-est-only', fitType='local'))
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XBSeq documentation built on Nov. 8, 2020, 11:12 p.m.
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data("ExampleData")
conditions <- factor(c(rep('C1',2), rep('C2', 2)))
XB <- XBSeqDataSet(Observed[,1:4], Background[,1:4], conditions)
XB <- estimateRealCount(XB)
XB <- estimateSizeFactors(XB)
expect_warning(estimateSCV(XB, method='per-condition', sharingMode='gene-est-only', fitType='local'))
Try the XBSeq package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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