Functions for performing print-run and array level quality assessment.
|Author||Agnes Paquet and Jean Yee Hwa Yang <email@example.com>|
|Date of publication||None|
|Maintainer||Agnes Paquet <firstname.lastname@example.org>|
agQuality: Diagnostic plots and comparative boxplots for general...
arrayQuality-internal: Internal arrayQuality functions
globalQuality: Quality measures for general hybridization.
gpQuality: Diagnostic plots and comparative boxplots for general...
gprDB: Reference slides for Mouse oligos hybridizations
heeboQuality: Diagnostics plots designed for HEEBO set controls
heeboQualityPlots: Qualitative diagnostic plot for general hybridization,...
maQualityPlots: Qualitative diagnostic plot for general hybridization
meeboQuality: Diagnostics plots designed for MEEBO set controls
meeboQualityPlots: Qualitative diagnostic plot for general hybridization,...
MmDEGenes: Known DE genes for Mouse quality hybridizations.
prdata: Example GPR files
PRv9mers: Print Run Quality version 9mers
PRvQCHyb: Print run Quality version Quality Control Hybridization
qcScore: Quality Control score for general hybridization
qualBoxplot: Comparative boxplot for general hybridization Quality Control
qualityScore: Quality Control score for general hybridization
readAgilent: Extraction of measures from Agilent (.txt) files.
readcontrolCode: Control status information
readGPR: Reading GenePix gpr file
readSpikeTypes: Read Spike Types File
readSpot: Extraction of measures from Spot (.spot) files.
scaleRefTable: General hybridization quality scaling
slideQuality: Quality Control statistics for general hybridization
spotQuality: Diagnostic plots and comparative boxplots for general...