arrayQuality: Assessing array quality on spotted arrays

Functions for performing print-run and array level quality assessment.

AuthorAgnes Paquet and Jean Yee Hwa Yang <yeehwa@stat.berkeley.edu>
Date of publicationNone
MaintainerAgnes Paquet <paquetagnes@yahoo.com>
LicenseLGPL
Version1.52.0
http://arrays.ucsf.edu/

View on Bioconductor

Files in this package

arrayQuality/DESCRIPTION
arrayQuality/NAMESPACE
arrayQuality/R
arrayQuality/R/PRQCv1.R arrayQuality/R/PRQCv2.R arrayQuality/R/agQuality.R arrayQuality/R/arrayControl.R arrayQuality/R/gpQuality.R arrayQuality/R/heeboQuality.R arrayQuality/R/heeboSetQC.R arrayQuality/R/meeboQuality.R arrayQuality/R/qpHeeboFunc.R arrayQuality/R/qpHexbin.R arrayQuality/R/qpMeeboFunc.R arrayQuality/R/qualFunc.R arrayQuality/R/qualityPlots.R arrayQuality/R/spikeIn.R arrayQuality/R/spotQuality.R
arrayQuality/data
arrayQuality/data/HsReferenceDB.RData
arrayQuality/data/MmDEGenes.RData
arrayQuality/data/MmReferenceDB.RData
arrayQuality/inst
arrayQuality/inst/Heebo
arrayQuality/inst/Heebo/63421.gpr
arrayQuality/inst/Heebo/DCV2.0June06.txt
arrayQuality/inst/Heebo/hoc.gal
arrayQuality/inst/Meebo
arrayQuality/inst/Meebo/MeeboSpotType.txt
arrayQuality/inst/Meebo/RDI108_n.gpr
arrayQuality/inst/Meebo/StanfordDCV1.7complete.txt
arrayQuality/inst/gprQCData
arrayQuality/inst/gprQCData/12Mm250.gpr
arrayQuality/inst/gprQCData/9Mm137.gpr
arrayQuality/inst/gprQCData/index.html
arrayQuality/man
arrayQuality/man/MmDEGenes.Rd arrayQuality/man/PRv9mers.Rd arrayQuality/man/PRvQCHyb.Rd arrayQuality/man/agQuality.Rd arrayQuality/man/arrayQuality-internal.Rd arrayQuality/man/globalQuality.Rd arrayQuality/man/gpQuality.Rd arrayQuality/man/gprDB.Rd arrayQuality/man/heeboQuality.Rd arrayQuality/man/heeboQualityPlots.Rd arrayQuality/man/maQualityPlots.Rd arrayQuality/man/meeboQuality.Rd arrayQuality/man/meeboQualityPlots.Rd arrayQuality/man/prdata.Rd arrayQuality/man/qcScore.Rd arrayQuality/man/qualBoxplot.Rd arrayQuality/man/qualityScore.Rd arrayQuality/man/readAgilent.Rd arrayQuality/man/readGPR.Rd arrayQuality/man/readSpikeTypes.Rd arrayQuality/man/readSpot.Rd arrayQuality/man/readcontrolCode.Rd arrayQuality/man/scaleRefTable.Rd arrayQuality/man/slideQuality.Rd arrayQuality/man/spotQuality.Rd
arrayQuality/vignettes
arrayQuality/vignettes/basicQuality.html
arrayQuality/vignettes/customQuality.html
arrayQuality/vignettes/images
arrayQuality/vignettes/images/9mersDiagnosticPlot.png
arrayQuality/vignettes/images/QCHybDiagPlot.png
arrayQuality/vignettes/images/comparativeBoxplot.png
arrayQuality/vignettes/images/genHybDiagPlot.png
arrayQuality/vignettes/images/htmlReport.png
arrayQuality/vignettes/images/lifecycle.png
arrayQuality/vignettes/images/mySpotTypes.png
arrayQuality/vignettes/images/qualityDiagram.png
arrayQuality/vignettes/index.html
arrayQuality/vignettes/meeboQualityGuide.htm
arrayQuality/vignettes/meeboQualityGuide_files
arrayQuality/vignettes/meeboQualityGuide_files/filelist.xml
arrayQuality/vignettes/meeboQualityGuide_files/header.htm
arrayQuality/vignettes/meeboQualityGuide_files/image001.jpg
arrayQuality/vignettes/meeboQualityGuide_files/image003.jpg
arrayQuality/vignettes/meeboQualityGuide_files/image005.png
arrayQuality/vignettes/meeboQualityGuide_files/image007.png
arrayQuality/vignettes/meeboQualityGuide_files/image009.png
arrayQuality/vignettes/meeboQualityGuide_files/image011.png
arrayQuality/vignettes/meeboQualityGuide_files/image013.png
arrayQuality/vignettes/meeboQualityGuide_files/image015.png
arrayQuality/vignettes/meeboQualityGuide_files/image017.png
arrayQuality/vignettes/meeboQualityGuide_files/image019.png
arrayQuality/vignettes/meeboQualityGuide_files/image021.png
arrayQuality/vignettes/print-runQC.html

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.