scaleRefTable: General hybridization quality scaling
In arrayQuality: Assessing array quality on spotted arrays

Description Usage Arguments Value Author(s) See Also

This function helps you scale quality measures in order to compare them on the same plot. It is used on reference slides to create a look-up table, which will be used to scale other slides.

1	scaleRefTable(reference=NULL, organism=c("Mm", "Hs"))

`organism`	A "character" string naming the organism genome printed on the array, either "Mm" or "Hs". By default, organism is set to "Mm". It is used to retrieve the corresponding reference tables.
`reference`	A matrix resulting from globalQuality, to be used as reference table to compare slides. If 'NULL', the default table corresponding to organism will be used.

A matrix containing median and iqr for each quality measure for tested slides.

Agnes Paquet

gpQuality, globalQuality, qualBoxplot

arrayQuality documentation built on Nov. 8, 2020, 5:12 p.m.