readAgilent: Extraction of measures from Agilent (.txt) files.

Description Usage Arguments Value Author(s) See Also

Description

This component reads an Agilent file (.txt) and returns columns used for quality control.

Usage

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readAgilent(fnames = NULL, path= ".", DEBUG=FALSE, skip = 0, sep ="\t",
quote="\"",controlId=c("ProbeName"), ...)

Arguments

fnames

A "character" string naming the input file.

path

a "character" string representing the data directory. By default this is set to the current working directory (".").

DEBUG

If 'TRUE', debug statements are printed.

skip

Number of lines to skip in the gpr files.

sep

A "character" string defining the type of separation for the columns in the gpr files.

quote

A "character" string defining the type of quote in the gpr files.

controlId

Character string. Name of the column of the file used to define controls.

...

additional arguments.

Value

A list of vectors containing information extracted from the Agilent file

Author(s)

Agnes Paquet

See Also

slideQuality, agQuality, globalQuality


arrayQuality documentation built on Nov. 8, 2020, 5:12 p.m.