readAgilent: Extraction of measures from Agilent (.txt) files.

In arrayQuality: Assessing array quality on spotted arrays

Description

This component reads an Agilent file (.txt) and returns columns used for quality control.

Usage

readAgilent(fnames = NULL, path= ".", DEBUG=FALSE, skip = 0, sep ="\t",
quote="\"",controlId=c("ProbeName"), ...)

Arguments

fnames	A "character" string naming the input file.
path	a "character" string representing the data directory. By default this is set to the current working directory (".").
DEBUG	If 'TRUE', debug statements are printed.
skip	Number of lines to skip in the gpr files.
sep	A "character" string defining the type of separation for the columns in the gpr files.
quote	A "character" string defining the type of quote in the gpr files.
controlId	Character string. Name of the column of the file used to define controls.
...	additional arguments.

Value

A list of vectors containing information extracted from the Agilent file

Author(s)

Agnes Paquet

See Also

slideQuality, agQuality, globalQuality

arrayQuality documentation built on Nov. 8, 2020, 5:12 p.m.