qualityScore: Quality Control score for general hybridization
In arrayQuality: Assessing array quality on spotted arrays
Description
Usage
Arguments
Value
Author(s)
Description
This function returns, for each quality measure, the
percentage of reference slides measures which are below the tested
slide values. For more details on this score, refer to the online
manual.
Usage
1
2
qualityScore(slidequality, organism = c("Mm", "Hs"), reference =
NULL)
Arguments
slidequality
A quality matrix from slideQuality.
reference
A matrix resulting from globalQuality, to be used as
reference table to compare slides. If 'NULL', the default table
corresponding to organism will be used. See details for more
information.
organism
A "character" string naming the organism genome
printed on the array, either "Mm" or "Hs". By default, organism is
set to "Mm". It is used to retrieve the corresponding reference tables.
Value
QualityScore returns a matrix of percentages of qc measures under
the lower limit of the reference values.
Author(s)
Agnes Paquet
arrayQuality documentation built on Nov. 8, 2020, 5:12 p.m.
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Description Usage Arguments Value Author(s)
Description
This function returns, for each quality measure, the percentage of reference slides measures which are below the tested slide values. For more details on this score, refer to the online manual.
Usage
1 2 | qualityScore(slidequality, organism = c("Mm", "Hs"), reference =
NULL)
|
Arguments
slidequality |
A quality matrix from slideQuality. |
reference |
A matrix resulting from globalQuality, to be used as reference table to compare slides. If 'NULL', the default table corresponding to organism will be used. See details for more information. |
organism |
A "character" string naming the organism genome printed on the array, either "Mm" or "Hs". By default, organism is set to "Mm". It is used to retrieve the corresponding reference tables. |
Value
QualityScore returns a matrix of percentages of qc measures under the lower limit of the reference values.
Author(s)
Agnes Paquet
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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