recodeClusterY: Recode feature module labels
In celda: CEllular Latent Dirichlet Allocation
Description
Usage
Arguments
Value
Examples
View source: R/celda_functions.R
Description
Recode feature module clusters using a mapping in the
from and to arguments.
Usage
1
recodeClusterY(sce, from, to, altExpName = "featureSubset")
Arguments
sce
SingleCellExperiment object returned from
celda_G or celda_CG. Must contain column
celda_feature_module in
rowData(altExp(sce, altExpName)).
from
Numeric vector. Unique values in the range of
seq(celdaModules(sce)) that correspond to the original module labels
in sce.
to
Numeric vector. Unique values in the range of
seq(celdaModules(sce)) that correspond to the new module labels.
altExpName
The name for the altExp slot
to use. Default "featureSubset".
Value
@return SingleCellExperiment object with recoded
feature module labels.
Examples
1
2
data(sceCeldaCG)
sceReorderedY <- recodeClusterY(sceCeldaCG, c(1, 3), c(3, 1))
celda documentation built on Nov. 8, 2020, 8:24 p.m.
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Description Usage Arguments Value Examples
View source: R/celda_functions.R
Description
Recode feature module clusters using a mapping in the
from and to arguments.
Usage
1 | recodeClusterY(sce, from, to, altExpName = "featureSubset")
|
Arguments
sce |
SingleCellExperiment object returned from
celda_G or celda_CG. Must contain column
|
from |
Numeric vector. Unique values in the range of
|
to |
Numeric vector. Unique values in the range of
|
altExpName |
The name for the altExp slot to use. Default "featureSubset". |
Value
@return SingleCellExperiment object with recoded feature module labels.
Examples
1 2 | data(sceCeldaCG)
sceReorderedY <- recodeClusterY(sceCeldaCG, c(1, 3), c(3, 1))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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