recodeClusterZ: Recode cell cluster labels
In celda: CEllular Latent Dirichlet Allocation
Description
Usage
Arguments
Value
Examples
View source: R/celda_functions.R
Description
Recode cell subpopulaton clusters using a mapping in the
from and to arguments.
Usage
1
recodeClusterZ(sce, from, to, altExpName = "featureSubset")
Arguments
sce
SingleCellExperiment object returned from
celda_C or celda_CG. Must contain column
celda_cell_cluster in
colData(altExp(sce, altExpName)).
from
Numeric vector. Unique values in the range of
seq(celdaClusters(sce, altExpName = altExpName)) that correspond to
the original cluster
labels in sce.
to
Numeric vector. Unique values in the range of
seq(celdaClusters(sce, altExpName = altExpName)) that correspond to
the new cluster labels.
altExpName
The name for the altExp slot
to use. Default "featureSubset".
Value
SingleCellExperiment object with recoded cell
cluster labels.
Examples
1
2
data(sceCeldaCG)
sceReorderedZ <- recodeClusterZ(sceCeldaCG, c(1, 3), c(3, 1))
celda documentation built on Nov. 8, 2020, 8:24 p.m.
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Description Usage Arguments Value Examples
View source: R/celda_functions.R
Description
Recode cell subpopulaton clusters using a mapping in the
from and to arguments.
Usage
1 | recodeClusterZ(sce, from, to, altExpName = "featureSubset")
|
Arguments
sce |
SingleCellExperiment object returned from
celda_C or celda_CG. Must contain column
|
from |
Numeric vector. Unique values in the range of
|
to |
Numeric vector. Unique values in the range of
|
altExpName |
The name for the altExp slot to use. Default "featureSubset". |
Value
SingleCellExperiment object with recoded cell cluster labels.
Examples
1 2 | data(sceCeldaCG)
sceReorderedZ <- recodeClusterZ(sceCeldaCG, c(1, 3), c(3, 1))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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