runParams: Get run parameters from a celda model 'SingleCellExperiment'...

In celda: CEllular Latent Dirichlet Allocation

Description

Returns details on the clustering parameters and model priors from the celdaList object when it was created.

Usage

runParams(x, ...)

## S4 method for signature 'SingleCellExperiment'
runParams(x, altExpName = "featureSubset")

## S4 method for signature 'celdaList'
runParams(x)

Arguments

x	An object of class SingleCellExperiment or class celdaList.
...	Ignored. Placeholder to prevent check warning.
altExpName	The name for the altExp slot to use. Default "featureSubset".

Value

Data Frame. Contains details on the various K/L parameters, chain parameters, seed, and final log-likelihoods derived for each model in the provided celdaList.

Examples

data(sceCeldaCGGridSearch)
runParams(sceCeldaCGGridSearch)
data(celdaCGGridSearchRes)
runParams(celdaCGGridSearchRes)

celda documentation built on Nov. 8, 2020, 8:24 p.m.