simulateCells: Simulate count data from the celda generative models.

Description Usage Arguments Value Examples

View source: R/all_generics.R

Description

This function generates a list containing a simulated counts matrix, as well as various parameters used in the simulation which can be useful for running celda. The user must provide the desired model (one of celda_C, celda_G, celda_CG) as well as any desired tuning parameters for those model's simulation functions as detailed below.

Usage

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Arguments

model

Character. Options available in 'celda::availableModels'.

...

Additional parameters.

Value

List. Contains the simulated counts matrix, derived cell cluster assignments, the provided parameters, and estimated Dirichlet distribution parameters for the model.

Examples

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celda documentation built on June 9, 2020, 2 a.m.