chromVAR: Chromatin Variation Across Regions

Determine variation in chromatin accessibility across sets of annotations or peaks. Designed primarily for single-cell or sparse chromatin accessibility data, e.g. from scATAC-seq or sparse bulk ATAC or DNAse-seq experiments.

Getting started

Package details

AuthorAlicia Schep [aut, cre], Jason Buenrostro [ctb], Caleb Lareau [ctb], William Greenleaf [ths], Stanford University [cph]
Bioconductor views GeneRegulation Sequencing SingleCell
MaintainerAlicia Schep <[email protected]>
LicenseMIT + file LICENSE
Version1.4.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("chromVAR")

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chromVAR documentation built on Nov. 1, 2018, 3:47 a.m.