plotDeviationsTsne: plotDeviationsTsne
In chromVAR: Chromatin Variation Across Regions
Description
Usage
Arguments
Value
Author(s)
Description
plots sample similarity tsne
Usage
1
2
plotDeviationsTsne(object, tsne, var_df = NULL, sample_column = NULL,
annotation_name = NULL, shiny = interactive())
Arguments
object
deviations result object
tsne
result from deviationsTsne
var_df
variability result
sample_column
column name for sample data – colData(object) – to be
used for coloring points
annotation_name
name of chromVAR annotation for coloring points
shiny
return shiny app? otherwise return static plots
Value
shiny app or plots
Author(s)
Alicia Schep
chromVAR documentation built on Nov. 8, 2020, 6:46 p.m.
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Description Usage Arguments Value Author(s)
Description
plots sample similarity tsne
Usage
1 2 | plotDeviationsTsne(object, tsne, var_df = NULL, sample_column = NULL,
annotation_name = NULL, shiny = interactive())
|
Arguments
object |
deviations result object |
tsne |
result from |
var_df |
variability result |
sample_column |
column name for sample data – colData(object) – to be used for coloring points |
annotation_name |
name of chromVAR annotation for coloring points |
shiny |
return shiny app? otherwise return static plots |
Value
shiny app or plots
Author(s)
Alicia Schep
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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