getJasparMotifs: getJasparMotifs

In chromVAR: Chromatin Variation Across Regions

Description

Function to get motifs from JASPAR database

Usage

getJasparMotifs(species = "Homo sapiens", collection = "CORE", ...)

Arguments

species	Which species? use eithe jaspar code or latin name. default is 'Homo sapiens'
collection	Which collection to use? default is 'CORE'
...	additional arguments to opts for getMatrixSet

Details

Simply a wrapper function for getMatrixSet that calls JASPAR2016 database using JASPAR2016

Value

PFMatrixList

Examples

motifs <- getJasparMotifs()

chromVAR documentation built on Nov. 8, 2020, 6:46 p.m.