plotVariability: plotVariability

In chromVAR: Chromatin Variation Across Regions

Description

plot variability of motifs/etc

Usage

plotVariability(variability, xlab = "Sorted TFs", n = 3,
  labels = variability$name, use_plotly = interactive())

Arguments

variability	output from computeVariability
xlab	label for x-axis (default is 'Sorted TFs')
n	number of toppoints to label?
labels	names of sets. if not given, uses rownames of variability
use_plotly	make plot interactive (using plotly)

Value

ggplot or plotly object, depending on whether use_plotly is TRUE

Author(s)

Alicia Schep

Examples

# Load very small example results from computeDeviations
data(mini_dev, package = "chromVAR")
variability <- computeVariability(mini_dev)
var_plot <- plotVariability(variability, use_plotly = FALSE) 

chromVAR documentation built on Nov. 8, 2020, 6:46 p.m.