combinedMultiHMM: Combined multivariate HMM object

In chromstaR: Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data

Description

The combined multivariate HMM object is output of the function combineMultivariates and is a list() with various entries. The class() attribute of this list was set to "combinedMultiHMM". For a given hmm, the entries can be accessed with the list operators 'hmm[[]]' or 'hmm$'.

Value

A list() with the following entries:

info	Experiment table for this object.
bins	A GRanges-class object containing genomic bin coordinates and human readable combinations for the combined multiHMM objects.
segments	Same as bins, but consecutive bins with the same state are collapsed into segments.
segments.per.condition	A list() with segments for each condition separately.
peaks	A list() with GRanges-class containing peak coordinates for each ID in info.
frequencies	Genomic frequencies of combinations.
mode	Mode of analysis.

See Also

combineMultivariates, uniHMM, multiHMM

chromstaR documentation built on Nov. 8, 2020, 8:29 p.m.