Get the genomewide frequency of each combinatorial state.
genomicFrequencies(multi.hmm, combinations = NULL, per.mark = FALSE)
A multiHMM or combinedMultiHMM object or a file that contains such an object.
A vector with combinations for which the frequency will be calculated. If NULL all combinations will be considered.
Set to TRUE if you want frequencies per mark instead of per combination.
A table with frequencies of each combinatorial state.
## Get an example multiHMM
file <- system.file("data","multivariate_mode-combinatorial_condition-SHR.RData",
model <- get(load(file))
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