getCombinations: Get combinations
In chromstaR: Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data
Description
Usage
Arguments
Value
Examples
View source: R/getCombinations.R
Description
Get a DataFrame with combinations from a GRanges-class object.
Usage
1
getCombinations(gr)
Arguments
gr
A GRanges-class object from which the meta-data columns containing combinations will be extracted.
Value
A DataFrame.
Examples
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### Get an example multiHMM ###
file <- system.file("data","multivariate_mode-combinatorial_condition-SHR.RData",
package="chromstaR")
model <- get(load(file))
### Get the combinations
bin.combs <- getCombinations(model$bins)
print(bin.combs)
seg.combs <- getCombinations(model$segments)
print(seg.combs)
chromstaR documentation built on Nov. 8, 2020, 8:29 p.m.
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Description Usage Arguments Value Examples
View source: R/getCombinations.R
Description
Get a DataFrame with combinations from a GRanges-class object.
Usage
1 | getCombinations(gr)
|
Arguments
gr |
A |
Value
A DataFrame.
Examples
1 2 3 4 5 6 7 8 9 | ### Get an example multiHMM ###
file <- system.file("data","multivariate_mode-combinatorial_condition-SHR.RData",
package="chromstaR")
model <- get(load(file))
### Get the combinations
bin.combs <- getCombinations(model$bins)
print(bin.combs)
seg.combs <- getCombinations(model$segments)
print(seg.combs)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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