heatmapCountCorrelation: Read count correlation heatmap

Description Usage Arguments Value See Also Examples

View source: R/plotting.R

Description

Heatmap of read count correlations (see cor).

Usage

1
heatmapCountCorrelation(model, cluster = TRUE)

Arguments

model

A multiHMM or combinedMultiHMM object or file that contains such an object.

cluster

Logical indicating whether or not to cluster the heatmap.

Value

A ggplot object.

See Also

plotting

Examples

1
2
3
4
5
6
## Get an example multiHMM ##
file <- system.file("data","multivariate_mode-combinatorial_condition-SHR.RData",
                    package="chromstaR")
model <- get(load(file))
## Plot count correlations as heatmap
heatmapCountCorrelation(model)

chromstaR documentation built on May 31, 2017, 11:32 a.m.

Search within the chromstaR package
Search all R packages, documentation and source code