mergedBSJunctions: mergedBSJunctions

In circRNAprofiler: circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs

Description

A data frame containing genomic coordinates (genome assembly hg19) detected in human LV tissues of controls and diseased hearts. This data frame was generated with mergedBSJunctions which grouped circRNAs commonly identified by the three tools (CircMarker(cm), MapSplice2 (m) and NCLscan (n)) used for circRNAs detection.

Usage

data(mergedBSJunctions)

Format

A data frame with 41558 rows and 16 columns

id

Unique identifier

gene

is the gene name whose exon coordinates overlap that of the given back-spliced junctions

strand

is the strand where the gene is transcribed

chrom

the chromosome from which the circRNA is derived

startUpBSE

is the 5' coordinate of the upstream back-spliced exon in the transcript. This corresponds to the back-spliced junction / acceptor site

endDownBSE

is the 3' coordinate of the downstream back-spliced exon in the transcript. This corresponds to the back-spliced junction / donor site

tool

are the tools that identified the back-spliced junctions

C1

Number of occurences of each circRNA in control 1

C2

Number of occurences of each circRNA in control 2

C3

Number of occurences of each circRNA in control 3

D1

Number of occurences of each circRNA in DCM 1

D2

Number of occurences of each circRNA in DCM 2

D3

Number of occurences of each circRNA in DCM 3

H1

Number of occurences of each circRNA in HCM 1

H2

Number of occurences of each circRNA in HCM 2

H3

Number of occurences of each circRNA in HCM 3

Examples

data(mergedBSJunctions)

circRNAprofiler documentation built on March 6, 2021, 2 a.m.