Files in circRNAprofiler
circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs

NEWS.md
DESCRIPTION
README.md
NAMESPACE
inst/doc/circRNAprofiler.R
inst/doc/circRNAprofiler.html
inst/doc/circRNAprofiler.Rmd
inst/extdata/miRs.txt
inst/extdata/experiment.txt
inst/extdata/nclscan/circRNAs_001.txt
inst/extdata/knife/circRNAs_001.txt
inst/extdata/circexplorer2/circRNAs_001.txt
inst/extdata/uroborus/circRNAs_001.txt
inst/extdata/circmarker/circRNAs_001.txt
inst/extdata/mapsplice/circRNAs_001.txt
inst/extdata/other/circRNAs_001.txt
vignettes/traits.txt
vignettes/motifs.txt
vignettes/miRs.txt
vignettes/references.bib
vignettes/experiment.txt
vignettes/transcripts.txt
vignettes/render_toc.R
vignettes/circRNAs_test.txt
vignettes/circRNAprofiler.Rmd
vignettes/images/image2.png
vignettes/images/image3.png
vignettes/images/image1.png
vignettes/images/image4.png
R/annotateSNPsGWAS.R R/formatGTF.R R/data.R R/getCircSeqs.R R/getDeseqRes.R R/getRegexPattern.R R/getRandomBSJunctions.R R/importFilesPredictionTool.R R/getSeqsFromGRs.R R/getPlots.R R/getMotifs.R R/filterCirc.R R/getBackSplicedJunctions.R R/annotateBSJs.R R/liftBSJcoords.R R/getEdgerRes.R R/supportFunctions.R R/checkProjectFolder.R R/getMirSites.R R/initCircRNAprofiler.R R/getSeqsAcrossBSJs.R R/annotateRepeats.R man/gwasTraits.Rd man/importCircMarker.Rd man/mergeMotifs.Rd man/importKnife.Rd man/plotExPosition.Rd man/getMotifs.Rd man/plotLenIntrons.Rd man/mergedBSJunctions.Rd man/importOther.Rd man/getSeqsFromGRs.Rd man/getBackSplicedJunctions.Rd man/getDeseqRes.Rd man/ahChainFiles.Rd man/backSplicedJunctions.Rd man/gtf.Rd man/getCircSeqs.Rd man/plotHostGenes.Rd man/ahRepeatMasker.Rd man/importMapSplice.Rd man/getRegexPattern.Rd man/iupac.Rd man/getDetectionTools.Rd man/plotMiR.Rd man/mergeBSJunctions.Rd man/importNCLscan.Rd man/annotateBSJs.Rd man/checkProjectFolder.Rd man/rearrangeMiRres.Rd man/initCircRNAprofiler.Rd man/importCircExplorer2.Rd man/annotateSNPsGWAS.Rd man/importUroborus.Rd man/formatGTF.Rd man/getMiRsites.Rd man/annotateRepeats.Rd man/plotTotExons.Rd man/liftBSJcoords.Rd man/filterCirc.Rd man/plotExBetweenBSEs.Rd man/getRandomBSJunctions.Rd man/miRspeciesCodes.Rd man/getEdgerRes.Rd man/attractSpecies.Rd man/getSeqsAcrossBSJs.Rd man/plotMotifs.Rd man/volcanoPlot.Rd man/plotLenBSEs.Rd
build/vignette.rds
tests/testthat.R tests/testthat/test_getBackSplicedJunctions.R tests/testthat/test_getRegexPattern.R tests/testthat/test_annotateBSJs.R tests/testthat/test_annotateRepeats.R tests/testthat/test_importFilesPredictionTool.R tests/testthat/test_getSeqsAcrossBSJs.R tests/testthat/test_formatGTF.R tests/testthat/test_getRandomBSJunctions.R tests/testthat/test_getCircSeqs.R tests/testthat/test_getMirSites.R tests/testthat/test_filterBSJs.R tests/testthat/test_getMotifs.R tests/testthat/test_getSeqsFromGRs.R
tests/testthat/testdata/traits.txt
tests/testthat/testdata/motifs.txt
tests/testthat/testdata/miRs.txt
tests/testthat/testdata/gencode.v27.gtf
tests/testthat/testdata/ncbi38.gtf
tests/testthat/testdata/UCSCmm10.gtf
tests/testthat/testdata/experiment.txt
tests/testthat/testdata/transcripts.txt
tests/testthat/testdata/GRCm38.92.gtf
tests/testthat/testdata/gencodeVM16.gtf
tests/testthat/testdata/mature.fa
tests/testthat/testdata/mapsplice/circRNAs_004.txt
tests/testthat/testdata/mapsplice/circRNAs_001.txt
tests/testthat/testdata/mapsplice/circRNAs_003.txt
tests/testthat/testdata/mapsplice/circRNAs_005.txt
tests/testthat/testdata/mapsplice/circRNAs_006.txt
tests/testthat/testdata/mapsplice/circRNAs_002.txt
tests/testthat/testdata/other/circRNAs_004.txt
tests/testthat/testdata/other/circRNAs_001.txt
tests/testthat/testdata/other/circRNAs_003.txt
tests/testthat/testdata/other/circRNAs_005.txt
tests/testthat/testdata/other/circRNAs_006.txt
tests/testthat/testdata/other/circRNAs_002.txt
data/gwasTraits.rda
data/gtf.rda
data/attractSpecies.rda
data/miRspeciesCodes.rda
data/iupac.rda
data/ahRepeatMasker.rda
data/ahChainFiles.rda
data/backSplicedJunctions.rda
data/mergedBSJunctions.rda
data/datalist
circRNAprofiler documentation built on Oct. 31, 2019, 3:23 a.m.