API for cn.farms
cn.FARMS - factor analysis for copy number estimation

Global functions
.onAttach Source code
.onLoad Source code
.onUnload Source code
JSDivergence Source code
KLDivergence Source code
KLInformation Source code
absFilePath Source code
addRestoreFile Source code
calcDistance Source code
callSummarize Man page Source code
callSummarizeH01 Source code
checkFunction Source code
checkTryErrorAny Source code
cn.farms Man page Source code
cnLibrary Man page Source code
combineData Man page
connectWebserver Source code
createAnnotation Man page Source code
createFF Source code
createMatrix Man page Source code
debug Source code
deleteRestoreFiles Source code
determineBaselineArray Source code
dirCreateStop Source code
distributionDistance Man page Source code
dnaCopySf Man page
doCnFarmsSingle Man page
errHandler Source code
fetchDirName Source code
fetchNames Source code
fit_model Source code
flcSnp6Std Man page Source code
flcStd Man page Source code
fragLengCorr Man page
getEffects Source code
getFragmentSet Man page Source code
getNamedArguments Source code
getProbePositionEffectDesignMatrix Source code
getSingleProbeSetSize Man page Source code
getVar Source code
initializeBigMatrix Source code
mlSummarization Man page Source code
normAdd Man page Source code
normalizeAverage Man page Source code
normalizeCels Man page
normalizeNone Man page
normalizeNoneDataH01 Source code
normalizeNpData Man page Source code
normalizeNpDataH01 Source code
normalizeQuantiles Man page
normalizeQuantilesNpH01 Source code
normalizeSequenceEffect Man page Source code
normalizeSor Man page
plotDendrogram Man page Source code
plotDensity Man page Source code
plotEvalIc Man page Source code
plotRegions Man page Source code
plotSmoothScatter Man page Source code
plotViolines Man page Source code
predict_effect Source code
predict_model Source code
searchCommandline Source code
setOption Source code
setVar Source code
sfApply Source code
sfCapply Source code
sfCat Source code
sfCheck Source code
sfClusterApply Source code
sfClusterApplyLB Source code
sfClusterApplySR Source code
sfClusterCall Source code
sfClusterEval Source code
sfClusterEvalQ Source code
sfClusterMap Source code
sfClusterSetupRNG Source code
sfClusterSetupRNGstream Source code
sfClusterSetupSPRNG Source code
sfClusterSplit Source code
sfCpus Source code
sfExport Source code
sfExportAll Source code
sfGetCluster Source code
sfInit Source code
sfIsRunning Source code
sfLapply Source code
sfLibrary Source code
sfMM Source code
sfNodes Source code
sfParallel Source code
sfRapply Source code
sfRemove Source code
sfRemoveAll Source code
sfRestore Source code
sfSapply Source code
sfSession Source code
sfSetMaxCPUs Source code
sfSocketHosts Source code
sfSource Source code
sfStop Source code
sfTest Source code
sfType Source code
simpleAssign Source code
slSummarization Man page Source code
sparseFarmsC Man page Source code
startedWithSfCluster Source code
summarizeFarmsExact Man page Source code
summarizeFarmsExact2 Man page Source code
summarizeFarmsExact3 Man page Source code
summarizeFarmsGaussian Man page Source code
summarizeFarmsMethods Man page Source code
summarizeFarmsStatistics Man page Source code
summarizeFarmsVariational Man page Source code
summarizeWindowBps Man page Source code
summarizeWindowMethods Man page Source code
summarizeWindowStd Man page Source code
whichVector Source code
cn.farms documentation built on April 29, 2020, 4:07 a.m.