API for cn.farms
cn.FARMS - factor analysis for copy number estimation
| Global functions | |
|---|---|
| .onAttach | Source code |
| .onLoad | Source code |
| .onUnload | Source code |
| JSDivergence | Source code |
| KLDivergence | Source code |
| KLInformation | Source code |
| absFilePath | Source code |
| addRestoreFile | Source code |
| calcDistance | Source code |
| callSummarize | Man page Source code |
| callSummarizeH01 | Source code |
| checkFunction | Source code |
| checkTryErrorAny | Source code |
| cn.farms | Man page Source code |
| cnLibrary | Man page Source code |
| combineData | Man page |
| connectWebserver | Source code |
| createAnnotation | Man page Source code |
| createFF | Source code |
| createMatrix | Man page Source code |
| debug | Source code |
| deleteRestoreFiles | Source code |
| determineBaselineArray | Source code |
| dirCreateStop | Source code |
| distributionDistance | Man page Source code |
| dnaCopySf | Man page |
| doCnFarmsSingle | Man page |
| errHandler | Source code |
| fetchDirName | Source code |
| fetchNames | Source code |
| fit_model | Source code |
| flcSnp6Std | Man page Source code |
| flcStd | Man page Source code |
| fragLengCorr | Man page |
| getEffects | Source code |
| getFragmentSet | Man page Source code |
| getNamedArguments | Source code |
| getProbePositionEffectDesignMatrix | Source code |
| getSingleProbeSetSize | Man page Source code |
| getVar | Source code |
| initializeBigMatrix | Source code |
| mlSummarization | Man page Source code |
| normAdd | Man page Source code |
| normalizeAverage | Man page Source code |
| normalizeCels | Man page |
| normalizeNone | Man page |
| normalizeNoneDataH01 | Source code |
| normalizeNpData | Man page Source code |
| normalizeNpDataH01 | Source code |
| normalizeQuantiles | Man page |
| normalizeQuantilesNpH01 | Source code |
| normalizeSequenceEffect | Man page Source code |
| normalizeSor | Man page |
| plotDendrogram | Man page Source code |
| plotDensity | Man page Source code |
| plotEvalIc | Man page Source code |
| plotRegions | Man page Source code |
| plotSmoothScatter | Man page Source code |
| plotViolines | Man page Source code |
| predict_effect | Source code |
| predict_model | Source code |
| searchCommandline | Source code |
| setOption | Source code |
| setVar | Source code |
| sfApply | Source code |
| sfCapply | Source code |
| sfCat | Source code |
| sfCheck | Source code |
| sfClusterApply | Source code |
| sfClusterApplyLB | Source code |
| sfClusterApplySR | Source code |
| sfClusterCall | Source code |
| sfClusterEval | Source code |
| sfClusterEvalQ | Source code |
| sfClusterMap | Source code |
| sfClusterSetupRNG | Source code |
| sfClusterSetupRNGstream | Source code |
| sfClusterSetupSPRNG | Source code |
| sfClusterSplit | Source code |
| sfCpus | Source code |
| sfExport | Source code |
| sfExportAll | Source code |
| sfGetCluster | Source code |
| sfInit | Source code |
| sfIsRunning | Source code |
| sfLapply | Source code |
| sfLibrary | Source code |
| sfMM | Source code |
| sfNodes | Source code |
| sfParallel | Source code |
| sfRapply | Source code |
| sfRemove | Source code |
| sfRemoveAll | Source code |
| sfRestore | Source code |
| sfSapply | Source code |
| sfSession | Source code |
| sfSetMaxCPUs | Source code |
| sfSocketHosts | Source code |
| sfSource | Source code |
| sfStop | Source code |
| sfTest | Source code |
| sfType | Source code |
| simpleAssign | Source code |
| slSummarization | Man page Source code |
| sparseFarmsC | Man page Source code |
| startedWithSfCluster | Source code |
| summarizeFarmsExact | Man page Source code |
| summarizeFarmsExact2 | Man page Source code |
| summarizeFarmsExact3 | Man page Source code |
| summarizeFarmsGaussian | Man page Source code |
| summarizeFarmsMethods | Man page Source code |
| summarizeFarmsStatistics | Man page Source code |
| summarizeFarmsVariational | Man page Source code |
| summarizeWindowBps | Man page Source code |
| summarizeWindowMethods | Man page Source code |
| summarizeWindowStd | Man page Source code |
| whichVector | Source code |
