Files in cn.farms
cn.FARMS - factor analysis for copy number estimation
NAMESPACE
DESCRIPTION
build/vignette.rds
src/R_init_cnfarms.c
src/sparse_farms.c
src/sepp_vect.h
src/cn.farms.h
src/laplace.cpp
R/normalizeProbeSequence.R
R/plotDendrogram.R
R/normalizeNone.R
R/doCnFarms.R
R/windowFunctions.R
R/utils-lds.R
R/sysdata.rda
R/vanillaIce.R
R/summarizeFarmsLaplaceExact.R
R/summarizationMl.R
R/cnFarms.R
R/normalizeAverage.R
R/summarizeFarmsGaussian.R
R/plotDensity.R
R/plotSmoothScatter.R
R/plotEvalIc.R
R/sFsnowfall-internal.R
R/summarizeFarmsLaplaceExact2.R
R/snowfallExt.R
R/summarizeFarmsMethods.R
R/plotsRegions.R
R/summarizeStatistics.R
R/normalizeQuantiles.R
R/summarizeFarmsLaplaceExact3.R
R/summarizeFarmsLaplaceVar.R
R/windowMethods.R
R/normalizeSor.R
R/createMatrix.R
R/sFsnowWrappers.R
R/zzz.R
R/normAdd.R
R/fragLengthCorr.R
R/plotViolines.R
R/sFclusterFunctions.R
R/summarizationSl.R
R/sFinit.R
R/dnaCopySf.R
R/normalizeNpData.R
R/createAnnotation.R
R/correctPkgname.R
R/determineBaselineArray.R
R/sFsocketRequest.R
R/distributionDistance.R
R/combineData.R
R/normalizeCels.R
R/callSummarize.R
R/sparseFarmsC.R
demo/demo04Snp250k.R
demo/00Index
demo/demo05Snp50k.R
demo/demo99Testing.R
demo/demo02Snp5.R
demo/demo01Snp6.R
demo/demo03Snp500k.R
vignettes/cn.farms.Rnw
vignettes/bioinf-article.txi
vignettes/natbib.sty
vignettes/cnv.bib
vignettes/natbib.bst
vignettes/bioinf-bar.png
vignettes/cnFarmsDefs.sty
vignettes/bioinf.cls
vignettes/figures/figure1.pdf
vignettes/figures/figure2.pdf
man/plotRegions.Rd
man/summarizeWindowBps.Rd
man/normalizeSequenceEffect.Rd
man/summarizeFarmsStatistics.Rd
man/mlSummarization.Rd
man/summarizeFarmsExact3.Rd
man/cnLibrary.Rd
man/getFragmentSet.Rd
man/combineData.Rd
man/slSummarization.Rd
man/normalizeNpData.Rd
man/flcSnp6Std.Rd
man/plotDendrogram.Rd
man/plotViolines.Rd
man/flcStd.Rd
man/plotEvalIc.Rd
man/summarizeFarmsExact.Rd
man/summarizeFarmsVariational.Rd
man/callSummarize.Rd
man/fragLengCorr.Rd
man/cn.farms.Rd
man/normAdd.Rd
man/normalizeAverage.Rd
man/normalizeNone.Rd
man/normalizeSor.Rd
man/summarizeFarmsGaussian.Rd
man/plotSmoothScatter.Rd
man/summarizeFarmsMethods.Rd
man/summarizeWindowStd.Rd
man/doCnFarmsSingle.Rd
man/distributionDistance.Rd
man/sparseFarmsC.Rd
man/normalizeQuantiles.Rd
man/createAnnotation.Rd
man/summarizeWindowMethods.Rd
man/plotDensity.Rd
man/getSingleProbeSetSize.Rd
man/dnaCopySf.Rd
man/normalizeCels.Rd
man/createMatrix.Rd
man/summarizeFarmsExact2.Rd
inst/CITATION
inst/doc/cn.farms.Rnw
inst/doc/cn.farms.pdf
inst/doc/cn.farms.R
inst/exampleData/slData.RData
inst/exampleData/mlData.RData
inst/exampleData/testSegments.RData
inst/exampleData/normData.RData
inst/exampleData/annotation/pd.genomewidesnp.6/1.1.0/featureSet.RData
