callSummarize: Defines which variables should be written back when calling a...

In cn.farms: cn.FARMS - factor analysis for copy number estimation

Description

Defines which variables should be written back when calling a cn.farms run

Usage

callSummarize(object, psInfo, summaryMethod, summaryParam, batchList = NULL,
  cores = 1, runtype = "ff", returnValues, saveFile = "summData")

Arguments

object	an matrix with normalized intensity values.
psInfo	a data frame stating the physical position.
summaryMethod	the summarization method.
summaryParam	a list with the parameters of the summarization method.
batchList	batchList
cores	cores
runtype	mode how the results are saved. Possible values are ff or bm. If ff is chosen the data will not be saved automatically. With bm the results will be saved permanently.
returnValues	list with return values. For possible values see summaryMethod.
saveFile	name of the file to save.

Value

Results of FARMS run with specified parameters - exact FARMS version

Author(s)

Djork-Arne Clevert [e-mail] and Andreas Mitterecker [e-mail]

cn.farms documentation built on Nov. 8, 2020, 7:59 p.m.