Files in cn.mops
cn.mops - Mixture of Poissons for CNV detection in NGS data

DESCRIPTION
NAMESPACE
R
R/AllClasses.R R/AllGenerics.R R/calcFractionalCopyNumbers.R R/calcIntegerCopyNumbers.R R/cn.mops.R R/exomecn.mops.R R/getReadCountsFromBAM.R R/getSegmentReadCountsFromBAM.R R/haplocn.mops.R R/makeRobustCNVR.R R/methodsAccess.R R/normalizeChromosomes.R R/normalizeGenome.R R/plot-methods.R R/referencecn.mops.R R/segPlot.R R/segment.R R/show-methods.R R/singlecn.mops.R R/zzz.R
build
build/vignette.rds
data
data/cn.mops.RData
inst
inst/CITATION
inst/doc
inst/doc/cn.mops.R
inst/doc/cn.mops.Rnw
inst/doc/cn.mops.pdf
inst/extdata
inst/extdata/test1.bam
inst/extdata/test1.bam.bai
inst/extdata/test2.bam
inst/extdata/test2.bam.bai
inst/extdata/test3.bam
inst/extdata/test3.bam.bai
man
man/CNVDetectionResult.Rd man/CNVRanges.Rd man/X.Rd man/XRanges.Rd man/calcFractionalCopyNumbers-CNVDetectionResult-method.Rd man/calcFractionalCopyNumbers.Rd man/calcIntegerCopyNumbers-CNVDetectionResult-method.Rd man/calcIntegerCopyNumbers.Rd man/cn.mops.Rd man/cnvr-CNVDetectionResult-method.Rd man/cnvr.Rd man/cnvs-CNVDetectionResult-method.Rd man/cnvs.Rd man/exomeCounts.Rd man/exomecn.mops.Rd man/getReadCountsFromBAM.Rd man/getSegmentReadCountsFromBAM.Rd man/gr-CNVDetectionResult-method.Rd man/gr.Rd man/haplocn.mops.Rd man/individualCall-CNVDetectionResult-method.Rd man/individualCall.Rd man/iniCall-CNVDetectionResult-method.Rd man/iniCall.Rd man/integerCopyNumber-CNVDetectionResult-method.Rd man/integerCopyNumber.Rd man/localAssessments-CNVDetectionResult-method.Rd man/localAssessments.Rd man/makeRobustCNVR.Rd man/normalizeChromosomes.Rd man/normalizeGenome.Rd man/normalizedData-CNVDetectionResult-method.Rd man/normalizedData.Rd man/params-CNVDetectionResult-method.Rd man/params.Rd man/plot.Rd man/posteriorProbs-CNVDetectionResult-method.Rd man/posteriorProbs.Rd man/referencecn.mops.Rd man/sampleNames-CNVDetectionResult-method.Rd man/sampleNames.Rd man/segment.Rd man/segmentation-CNVDetectionResult-method.Rd man/segmentation.Rd man/segplot-CNVDetectionResult-method.Rd man/segplot.Rd man/show.Rd man/singlecn.mops.Rd
src
src/R_init_cnmops.c
src/cn.mops.h
src/cnmops.cpp
src/segment.cpp
vignettes
vignettes/bioinf-article.txi
vignettes/bioinf-bar.png
vignettes/bioinf.cls
vignettes/cn.mops.Rnw
vignettes/cnv.bib
vignettes/natbib.bst
vignettes/natbib.sty
cn.mops documentation built on May 31, 2017, 11:52 a.m.