genesName_ENSEMBL: Obtain the genes names in the genomic regions of interest...

Description Usage Arguments Details Value Author(s) References See Also Examples

View source: R/BiofeatureGraphics.R

Description

Obtain the genes names in the genomic regions of interest from ENSEMBL

Usage

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genesName_ENSEMBL(gen, chr, start, end, dataset)

Arguments

gen

the name of the genome

chr

the chromosome of interest

start

the first position in the region of interest (the smallest value)

end

the last position in the region of interest (the largest value)

dataset

Name of the database to select genes

Details

Can be null

Value

List of name of genes found in this region of interest.

Author(s)

Tiphaine Martin

References

go to ENSEMBL

http://bioconductor.org/packages/release/bioc/html/Gviz.html

See Also

ISCA_UCSC, GWAScatalog_UCSC, knownGenes_UCSC, GeneReviews_UCSC, GAD_UCSC, genes_ENSEMBL, xenorefGenes_UCSC, transcript_ENSEMBL,

Examples

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library("Gviz")
gen <- "hg38"
chr <- "chr7"
start <- 38290160
end <- 38303219

if(interactive()){
  dataset<- "hsapiens_gene_ensembl"
  geneNameEnsembl<- genesName_ENSEMBL(gen,chr,start,end,dataset)
  geneNameEnsembl
} else {
  data(geneNameEnsembl)
  geneNameEnsembl
}

coMET documentation built on May 2, 2018, 4:21 a.m.