repplots: reproducibility plots

In coRNAi: Analysis of co-knock-down RNAi data

Description

plots reproducibility of replicates within/between screens

Usage

BetweenScreenPlot(df, what="value",names,smooth=TRUE)
WithinScreenPlot(df, what="value",main="within-screen replicates",ylab ="technical replicate 2",xlab= "technical replicate 1",smooth=TRUE,...)

Arguments

df	df dataframe created by the cellHTS2df function
names	names optional, character vector with names of the different screens.
what	what what should be plotted, eg value or residuals
main	main main title
ylab	ylab label for y-axis
xlab	xlab label for x-axis
smooth	smooth shoud the smoothScatter function be called. Default is TRUE.
...	... further argument to be passed to the plot function

Value

pairs plot

Author(s)

Elin Axelsson

See Also

pairs,plot

Examples

data(screen1_raw)
df = cellHTS2df(screen1_raw,neutral="Fluc")
BetweenScreenPlot(df)
WithinScreenPlot(df)

coRNAi documentation built on Nov. 17, 2017, 11:14 a.m.