rlmmain: main effect estimation

In coRNAi: Analysis of co-knock-down RNAi data

Description

for rlmmain the main effects are estimated using rlm function from MASS package, with lmmain the OLS is used.

Usage

rlmmain(df,per=NULL)
lmmain(df,per=NULL)

Arguments

df	df dataframe created by function cellHTS2df
per	string argument for which factor the analysis should be done separately, eg. replicate or batch

Value

lm,rlm

Author(s)

Elin Axelsson

See Also

rlm,lm

Examples

data(screen1_raw)
df = cellHTS2df(screen1_raw,neutral="Fluc")
df = weightDf(df,exclude=c("controlP1","controlP2","controlN1","controlN2","controlP1N1","double"))
mains = rlmmain(df)
hist(coef(mains))

coRNAi documentation built on Nov. 17, 2017, 11:14 a.m.