signalplots: plot variation vs signal intensity

In coRNAi: Analysis of co-knock-down RNAi data

Description

plots the variation of replicates vs the mean intensity either by within screen replicate separatly or over all screen replicates.

Usage

SDplot(df, xlab="intensity mean",ylab="sd",add=FALSE,main,...)
MAplot(df, main,rank=FALSE)

Arguments

df	df dataframe created by cellHTS2df function
main	main character string to be used as main title
xlab	xlab label for x-axis
ylab	ylab label for y-axis
add	add logical, should result be added to existing plot
rank	rank if TRUE the rank of the average intensities will be used
...	... further arguments to be passed to the plot function.

Value

plot

Author(s)

Elin Axelsson

See Also

plot

Examples

data(screen1_raw)
df=cellHTS2df(screen1_raw,neutral="Fluc")
MAplot(df,main="raw data")
SDplot(df,main="raw data")

coRNAi documentation built on Nov. 17, 2017, 11:14 a.m.