Man pages for codelink
Manipulation of Codelink microarray data
| arrayNew | Create a new x11 device |
| arraySize | Determine the size of the array |
| as.matrix.Codelink | Return a matrix of intensity values |
| averageProbes | averageProbes |
| bkgdCorrect | Background correction of intensity values. |
| Codelink-class | Class Codelink |
| codelink.example | Dataset of class 'Codelink' |
| CodelinkSet-class | Class CodelinkSet |
| CodelinkSetUnique-class | Class CodelinkSetUnique |
| codPlot | Diagnostic plots for CodelinkSet object. |
| codset | Dataset of class 'CodelinkSet' |
| createWeights | Create weight for Codelink chips |
| cutCV | Calculate cutoff based in CV. |
| decDetect | Determine decimal type of Codelink files |
| dim.Codelink | Return the dimension of a Codelink object. |
| fc2Cond | Select probes based on fold change calculation |
| imageCodelink | Image plot of Codelink arrays |
| logCodelink | Application of logCodelink to Codelink object |
| mergeArray | Merge Codelink Bioarrays Data |
| na2false | Set NAs to FALSE |
| Nondocumented-objects | Here goes every undocumented function. |
| normalize | Normalization wrapper for Codelink/CodelinkSet objects. |
| plotCorrelation | Plot correlation scatterplot between two arrays |
| plotCV | Plot of CV |
| plotDensities | Plot Densities |
| plotMA | MA plot |
| printHead | Print briefly a Codelink object |
| readCodelink | Read Codelink Bioarrays Data |
| readHeader | Read Header from Codelink Bioarrays Files |
| readHeaderXLS | Read Header from XLS exported Codelink Bioarrays Files |
| reportCodelink | Write a report of genes selected in HTML |
| selCV | Select based on CV cutoff. |
| SNR | Calculate SNR |
| writeCodelink | Write a Codelink object to file. |
