plotCorrelation: Plot correlation scatterplot between two arrays

In codelink: Manipulation of Codelink microarray data

Description

Takes a Codelink object as argument and plot Correlation scatterplot of two arrays.

Usage

	plotCorrelation(object, x=1, y=2, cutoff=FALSE, label="type", title=NULL, xlim=NULL, ylim=NULL)

Arguments

object	an object of class "Codelink".
x	array to be used in x axis.
y	array to be used in y axis.
cutoff	cutoff used to show fold change.
label	labels to shown.
title	The title of the plot.
xlim	range for the X axis.
ylim	range for the Y axis.

Author(s)

Diego Diez

See Also

plot

Examples

## Not run: 
    data(codelink.example)
    plotCorrelation(codelink.example)

## End(Not run)

Example output

Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, lengths, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which, which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: limma

Attaching package: 'limma'

The following object is masked from 'package:BiocGenerics':

    plotMA


Attaching package: 'codelink'

The following objects are masked from 'package:limma':

    plotDensities, plotMA

The following object is masked from 'package:BiocGenerics':

    plotMA

codelink documentation built on Nov. 8, 2020, 8:19 p.m.