Codelink-class: Class Codelink

In codelink: Manipulation of Codelink microarray data

Description

This is the storage class for Codelink data

Objects from the Class

Object are created after reading text codelink files with readCodelink()

Description

Codelink objects contain a single "list", which contains the following elements:

sample

Object of class "character" containing the sample names

file

Object of class "character" containing the file names

name

Object of class "character" containing the probe ID

method

Object of class "list" containing log information

Smean

Object of class "matrix" containing spot mean intensities

Bmedian

Object of class "matrix" containing background median intensities

Ri

Object of class "matrix" containing raw intensities

Ni

Object of class "matrix" containing normalized intensities

snr

Object of class "matrix" containing signal to noise ratio values

flag

Object of class "character" containing assigned flags

Note

More details are in the package vignette

Author(s)

Diego Diez

Examples

## Not run: 
    data(codelink.example)

## End(Not run)

codelink documentation built on Nov. 8, 2020, 8:19 p.m.