API for cogena
co-expressed gene-set enrichment analysis
| Global functions | |
|---|---|
| AllGeneSymbols | Man page |
| DEexprs | Man page |
| PEI | Man page Source code |
| Psoriasis | Man page |
| Psoriasis,DEexprs,sampleLabel,cogena_result | Man page |
| annotationListToMatrix | Man page Source code |
| assignGenes | Source code |
| cl.ID | Source code |
| clEnrich | Man page Source code |
| clEnrich_one | Man page Source code |
| clusterMethods | Man page |
| clusterMethods,cogena-method | Man page |
| clusterMethods,cogena_methods | Man page |
| clusterMethods,genecl-method | Man page |
| clusterMethods,genecl_methods | Man page |
| coExp | Man page Source code |
| cogean_package | Man page |
| cogena | Man page |
| cogena-class | Man page |
| cogena_package | Man page |
| corInCluster | Man page |
| corInCluster,cogena-method | Man page |
| corInCluster,cogena_methods | Man page |
| dist.fn | Source code |
| enrichment | Man page |
| enrichment,cogena-method | Man page |
| enrichment,cogena_methods | Man page |
| gene2set | Man page Source code |
| geneExpInCluster | Man page |
| geneExpInCluster,cogena-method | Man page |
| geneExpInCluster,cogena_methods | Man page |
| geneInCluster | Man page |
| geneInCluster,cogena-method | Man page |
| geneInCluster,cogena_methods,cluster_methods | Man page |
| genecl-class | Man page |
| geneclusters | Man page |
| geneclusters,cogena-method | Man page |
| geneclusters,cogena_methods | Man page |
| geneclusters,genecl-method | Man page |
| geneclusters,genecl_methods | Man page |
| getCellResource | Source code |
| getCells | Source code |
| getResource | Source code |
| gmt2list | Man page Source code |
| gmtlist2file | Man page Source code |
| heatmap.3 | Man page Source code |
| heatmapCluster | Man page |
| heatmapCluster,cogena-method | Man page |
| heatmapCmap | Man page |
| heatmapCmap,cogena | Man page |
| heatmapCmap,cogena-method | Man page |
| heatmapPEI | Man page |
| heatmapPEI,cogena | Man page |
| heatmapPEI,cogena-method | Man page |
| logfc | Man page Source code |
| logfc, | Man page |
| map2col | Source code |
| mat | Man page |
| mat,cogena-method | Man page |
| mat,cogena_methods | Man page |
| mat,genecl-method | Man page |
| mat,genecl_methods | Man page |
| nClusters | Man page |
| nClusters,cogena-method | Man page |
| nClusters,cogena_methods | Man page |
| nClusters,genecl-method | Man page |
| nClusters,genecl_methods | Man page |
| pClusters | Man page Source code |
| plot.sota | Man page Source code |
| print.sota | Man page Source code |
| sampleLabel | Man page |
| show,cogena-method | Man page |
| show,cogena_methods | Man page |
| show,genecl-method | Man page |
| sota | Man page Source code |
| sota.init | Source code |
| splitNode | Source code |
| summary,cogena-method | Man page |
| summary,cogena_methods | Man page |
| summary,genecl-method | Man page |
| trainLeaves | Source code |
| upDownGene | Man page |
| upDownGene,cogena | Man page |
| upDownGene,cogena-method | Man page |
