Files in cogena

co-expressed gene-set enrichment analysis

README.md

NAMESPACE

DESCRIPTION

build/vignette.rds

data/datalist

data/AllGeneSymbols.RData

data/Psoriasis.RData

R/gmt2list.R R/corInCluster.R R/heatmapCmap.R R/heatmapCluster.R R/sota.R R/enrichment.R R/cogena.R R/gmtlist2file.R R/pClusters.R R/gene2set.R R/geneInCluster.R R/clEnrich.R R/clEnrich_one.R R/heatmap.3.R R/Class_methods.R R/heatmapPEI.R R/PEI.R R/genecl_class.R R/upDownGene.R R/geneExpInCluster.R R/dist_class.R R/coExp.R R/cogena_class.R vignettes/cogena-vignette_html.Rmd vignettes/cogena-vignette_pdf.Rmd

vignettes/Cogena_workflow.png

vignettes/custom.css

man/cogena_class.Rd man/sampleLabel.Rd man/heatmap.3.Rd man/clEnrich.Rd man/nClusters.Rd man/gmtlist2file.Rd man/geneclusters.Rd man/DEexprs.Rd man/gene2set.Rd man/cogena_package.Rd man/heatmapCluster.Rd man/AllGeneSymbols.Rd man/enrichment.Rd man/gmt2list.Rd man/Psoriasis.Rd man/clusterMethods.Rd man/heatmapPEI.Rd man/show.Rd man/PEI.Rd man/summary.Rd man/geneInCluster.Rd man/clEnrich_one.Rd man/upDownGene.Rd man/genecl_class.Rd man/pClusters.Rd man/sota.Rd man/coExp.Rd man/mat.Rd man/corInCluster.Rd man/heatmapCmap.Rd man/geneExpInCluster.Rd

inst/NEWS.Rd

inst/figure/Cogena_workflow.png

inst/doc/cogena-vignette_html.Rmd inst/doc/cogena-vignette_pdf.Rmd inst/doc/cogena-vignette_pdf.pdf inst/doc/cogena-vignette_html.R

inst/doc/cogena-vignette_html.html

inst/doc/cogena-vignette_pdf.R

inst/extdata/CmapDn100.gmt.xz

inst/extdata/c5.bp.v7.01.symbols.gmt.xz

inst/extdata/c2.cp.kegg.v7.01.symbols.gmt.xz

inst/extdata/c2.cp.kegg.v5.0.symbols.gmt.xz

inst/extdata/README

inst/extdata/CmapUp100.gmt.xz

cogena documentation built on Nov. 8, 2020, 6:54 p.m.