gmt2list: read gmt file as a list
In cogena: co-expressed gene-set enrichment analysis
Description
Usage
Arguments
Value
See Also
Examples
Description
read Gene Matrix Transposed (gmt) file and output a list with the the first
column as the names of items in the list. see
Gene Matrix Transposed file format
for more details.
Usage
1
gmt2list(annofile)
Arguments
annofile
a gmt file. Examples are from MSigDB Collections.
A list of gene set could be find in the vignette of cogena
Value
a gmt list
See Also
gmtlist2file
Examples
1
2
3
anno <- "c2.cp.kegg.v7.01.symbols.gmt.xz"
annofile <- system.file("extdata", anno, package="cogena")
gl <- gmt2list(annofile)
cogena documentation built on Nov. 8, 2020, 6:54 p.m.
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Description Usage Arguments Value See Also Examples
Description
read Gene Matrix Transposed (gmt) file and output a list with the the first column as the names of items in the list. see Gene Matrix Transposed file format for more details.
Usage
1 | gmt2list(annofile)
|
Arguments
annofile |
a gmt file. Examples are from MSigDB Collections. A list of gene set could be find in the vignette of cogena |
Value
a gmt list
See Also
gmtlist2file
Examples
1 2 3 | anno <- "c2.cp.kegg.v7.01.symbols.gmt.xz"
annofile <- system.file("extdata", anno, package="cogena")
gl <- gmt2list(annofile)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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