Psoriasis: Psoriasis dataset.
In cogena: co-expressed gene-set enrichment analysis
Description
An example dataset of Psoriasis. This dataset is used for
illustration of the usage of cogena package. It has been normalised
the expression profling using rma method, filtered some
non-informative genes using MetaDE package and analysed the
differentially expressed genes using limma package with
the cut-off adjuested p-value 0.05 and abs(logFC) >=1.
Format
two objects: DEexprs and sampleLabel.
- DEexprs
expression of DEG. There are 706 DEGs and 116 samples.
- sampleLabel
the label of sample, There are 58 control and 58 Psoriasis.
Source
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE13355
cogena documentation built on Nov. 8, 2020, 6:54 p.m.
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Description
An example dataset of Psoriasis. This dataset is used for
illustration of the usage of cogena package. It has been normalised
the expression profling using rma method, filtered some
non-informative genes using MetaDE package and analysed the
differentially expressed genes using limma package with
the cut-off adjuested p-value 0.05 and abs(logFC) >=1.
Format
two objects: DEexprs and sampleLabel.
- DEexprs
expression of DEG. There are 706 DEGs and 116 samples.
- sampleLabel
the label of sample, There are 58 control and 58 Psoriasis.
Source
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE13355
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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