API for compEpiTools
Tools for computational epigenomics
| Global functions | |
|---|---|
| GR2fasta | Man page |
| GR2fasta,GRanges-method | Man page |
| GR2fasta-methods | Man page |
| GRanges2ucsc | Man page |
| GRanges2ucsc,GRanges-method | Man page |
| GRanges2ucsc-methods | Man page |
| GRangesInPromoters | Man page |
| GRangesInPromoters,GRanges-method | Man page |
| GRangesInPromoters-methods | Man page |
| GRannotate | Man page |
| GRannotate,GRanges-method | Man page |
| GRannotate-methods | Man page |
| GRannotateSimple | Man page |
| GRannotateSimple,GRanges-method | Man page |
| GRannotateSimple-methods | Man page |
| GRbaseCoverage | Man page |
| GRbaseCoverage,GRanges-method | Man page |
| GRbaseCoverage-methods | Man page |
| GRcoverage | Man page |
| GRcoverage,GRanges-method | Man page |
| GRcoverage-methods | Man page |
| GRcoverageInbins | Man page |
| GRcoverageInbins,GRanges-method | Man page |
| GRcoverageInbins-methods | Man page |
| GRcoverageSummit | Man page |
| GRcoverageSummit,GRanges-method | Man page |
| GRcoverageSummit-methods | Man page |
| GRenrichment | Man page |
| GRenrichment,GRanges-method | Man page |
| GRenrichment-methods | Man page |
| GRmidpoint | Man page |
| GRmidpoint,GRanges-method | Man page |
| GRmidpoint-methods | Man page |
| GRsetwidth | Man page |
| GRsetwidth,GRanges-method | Man page |
| GRsetwidth-methods | Man page |
| TSS | Man page Source code |
| compEpiTools | Man page |
| compEpiTools-package | Man page |
| countOverlapsInBins | Man page |
| countOverlapsInBins,GRanges-method | Man page |
| countOverlapsInBins-methods | Man page |
| distanceFromTSS | Man page |
| distanceFromTSS,GRanges-method | Man page |
| distanceFromTSS-methods | Man page |
| enhancers | Man page |
| enhancers,GRanges-method | Man page |
| enhancers-methods | Man page |
| featuresLength | Man page |
| featuresLength,TxDb-method | Man page |
| featuresLength-methods | Man page |
| findLncRNA | Man page Source code |
| getPromoterClass | Man page |
| getPromoterClass,TxDb-method | Man page |
| getPromoterClass-methods | Man page |
| heatmapData | Man page Source code |
| heatmapPlot | Man page |
| makeGtfFromDb | Man page |
| makeGtfFromDb,TxDb-method | Man page |
| makeGtfFromDb-methods | Man page |
| matchEnhancers | Man page |
| matchEnhancers,GRanges-method | Man page |
| matchEnhancers-methods | Man page |
| overlapOfGRanges | Man page Source code |
| overlapOfGRanges,GRanges-method | Man page |
| overlapOfGRanges-methods | Man page |
| palette2d | Man page Source code |
| plotStallingIndex | Man page Source code |
| simplifyGOterms | Man page Source code |
| stallingIndex | Man page Source code |
| topGOres | Man page |
| ucsc2GRanges | Man page Source code |
| unionMaxScore | Man page |
| unionMaxScore,GRanges-method | Man page |
| unionMaxScore-methods | Man page |
