ucsc2GRanges: Convert UCSC-formatted genomic positions into a GRanges
In compEpiTools: Tools for computational epigenomics
Description
Usage
Arguments
Details
Value
References
Examples
Description
Convert UCSC-formatted genomic positions to a GRanges
object
Usage
1
ucsc2GRanges(ucscPositions)
Arguments
ucscPositions
character; a vector of UCSC formatted genomic
positions.
Details
UCSC formatted genomic positions such as chr5:10000-35000 are
converted into GRanges format.
Value
a GRanges with chr, start and end derived from the UCSC format
References
http://genomics.iit.it/groups/computational-epigenomics.html
Examples
1
ucsc2GRanges(c('chr1:100-500','chrX:20-1000'))
compEpiTools documentation built on Nov. 8, 2020, 5:32 p.m.
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Description Usage Arguments Details Value References Examples
Description
Convert UCSC-formatted genomic positions to a GRanges object
Usage
1 | ucsc2GRanges(ucscPositions)
|
Arguments
ucscPositions |
character; a vector of UCSC formatted genomic positions. |
Details
UCSC formatted genomic positions such as chr5:10000-35000 are converted into GRanges format.
Value
a GRanges with chr, start and end derived from the UCSC format
References
http://genomics.iit.it/groups/computational-epigenomics.html
Examples
1 | ucsc2GRanges(c('chr1:100-500','chrX:20-1000'))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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