TSS: based on a TxDb returns a GRanges with the TSS positions for...
In compEpiTools: Tools for computational epigenomics

based on a TxDb returns a GRanges of width 1 with the TSS positions for all transcripts

TSS(txdb)

txdb

An object of class TxDb

based on a TxDb returns a GRanges of width 1 with the TSS positions for all transcripts

A GRanges

http://genomics.iit.it/groups/computational-epigenomics.html

require(TxDb.Mmusculus.UCSC.mm9.knownGene)
txdb <- TxDb.Mmusculus.UCSC.mm9.knownGene
res <- TSS(txdb)
res[1:2]

compEpiTools documentation built on Nov. 8, 2020, 5:32 p.m.

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