GRanges2ucsc-methods: A GRanges method to convert ranges information into UCSC...
In compEpiTools: Tools for computational epigenomics

Chr assignments, start and end positions are converted into UCSC format, in the form chr1:100-500

To be used in this form:

GRanges2ucsc(Object)

where Object is a GRanges

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gr <- GRanges(Rle(c('chr1','chr2')), 
	ranges=IRanges(start=c(1e7, 2e7), end=c(1e7+19, 2e7+19)))
GRanges2ucsc(gr)

compEpiTools documentation built on Nov. 8, 2020, 5:32 p.m.

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