calculateFeatureCorrs: Calculate Spearman correlation between feature pairs

Description Usage Arguments Value Author(s)

View source: R/calculateCorrelations.R

Description

Calculate Spearman correlation between feature pairs

Usage

1
calculateFeatureCorrs(ddsList, maxNForCorr)

Arguments

ddsList

List of lists, with one element per data set. Each element is a list containing a DGEList and a DESeqDataSet, with calculated dispersions (e.g., output from calculateDispersionsddsList).

maxNForCorr

Maximal number of features to use for calculation of correlations. If the number of features in a data set exceeds maxNForCorr, maxNForCorr features will be randomly selected for calculation of correlations.

Value

A data frame with pairwise feature correlations for each data set

Author(s)

Charlotte Soneson


countsimQC documentation built on Feb. 5, 2021, 2:02 a.m.