countsimExample: Example list with three count data sets

Description Usage Format Details Value

Description

A named list with three elements, each corresponding to a (real or simulated) count data set.

Usage

1

Format

A named list with three elements, each corresponding to a (real or simulated) count data set.

Details

The Original data set represents a subset of 10,000 genes and 11 cells from the GSE74596 single-cell RNA-seq data set, obtained from the conquer repository (http://imlspenticton.uzh.ch:3838/conquer/). The Sim1 and Sim2 data sets similarly represent subsets of scRNA-seq data sets simulated with two different simulation methods, using the real GSE74596 data set as the basis for parameter estimation. Each data set is represented as a DESeqDataSet object.

Value

A named list with three elements, each corresponding to a (real or simulated) count data set.


countsimQC documentation built on Feb. 5, 2021, 2:02 a.m.