defineTableDesc: Define table descriptions

In countsimQC: Compare Characteristic Features of Count Data Sets

Description

Generate the text that describes the content of the tables generated by makeDF.

Usage

defineTableDesc(
  calculateStatistics,
  subsampleSize,
  kfrac,
  kmin,
  obstype,
  aspect,
  minvalue,
  maxvalue,
  permutationPvalues,
  nPermutations,
  nDatasets
)

Arguments

calculateStatistics	Whether or not statistics and p-values are calculated
subsampleSize	The number of observations for which certain (time-consuming) statistics will be calculated
kmin, kfrac	For statistics that require the extraction of k nearest neighbors of a given point, the number of neighbors will be max(kmin, kfrac * nrow(df))
obstype	The type of observation (e.g., sample, feature, sample pair)
aspect	The name of the aspect of interest
minvalue, maxvalue	The minimal and maximal value of the aspect of interest, used for scaling of the x axis when calculating the area between the eCDFs
permutationPvalues	Whether or not to calculate p-values of statistics via permutation
nPermutations	The number of permutations (only used if permutationPvalues = TRUE)
nDatasets	The number of data sets that are being compared

Value

A list with two text strings in markdown format: one for tables based on a single data column, and one for tables based on two data columns

Author(s)

Charlotte Soneson

countsimQC documentation built on Feb. 5, 2021, 2:02 a.m.