calculateSampleCorrs: Calculate Spearman correlation between sample pairs
In countsimQC: Compare Characteristic Features of Count Data Sets
Description
Usage
Arguments
Value
Author(s)
View source: R/calculateCorrelations.R
Description
Calculate Spearman correlation between sample pairs
Usage
1
calculateSampleCorrs(ddsList, maxNForCorr)
Arguments
ddsList
List of lists, with one element per data set. Each element is
a list containing a DGEList and a DESeqDataSet, with calculated
dispersions (e.g., output from calculateDispersionsddsList).
maxNForCorr
Maximal number of samples to use for correlation
calculation. If the number of samples in a data set exceeds
maxNForCorr, maxNForCorr samples will be randomly selected
for calculation of correlations.
Value
A data frame with pairwise sample correlations for each data set
Author(s)
Charlotte Soneson
countsimQC documentation built on Feb. 5, 2021, 2:02 a.m.
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Description Usage Arguments Value Author(s)
View source: R/calculateCorrelations.R
Description
Calculate Spearman correlation between sample pairs
Usage
1 | calculateSampleCorrs(ddsList, maxNForCorr)
|
Arguments
ddsList |
List of lists, with one element per data set. Each element is
a list containing a DGEList and a DESeqDataSet, with calculated
dispersions (e.g., output from |
maxNForCorr |
Maximal number of samples to use for correlation
calculation. If the number of samples in a data set exceeds
|
Value
A data frame with pairwise sample correlations for each data set
Author(s)
Charlotte Soneson
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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