calculateStats: Calculate statistics for pairwise comparison of data sets

In countsimQC: Compare Characteristic Features of Count Data Sets

Description

Calculate a range of statistics and p-values for comparison of two data sets.

Usage

calculateStats(
  df,
  ds1,
  ds2,
  column,
  subsampleSize,
  permute = FALSE,
  kmin,
  kfrac,
  xmin,
  xmax
)

Arguments

df	The input data frame. Must contain at least a column named 'dataset' and an additional column with values to use as the basis for the comparison.
ds1, ds2	The names of the two data sets to be compared.
column	The name of the column(s) of df to be used as the basis for the comparison.
subsampleSize	The number of observations for which certain time-consuming statistics will be calculated. The observations will be selected randomly among the rows of df.
permute	Whether to permute the dataset column of df before calculating the statistics.
kmin, kfrac	For statistics that require the extraction of k nearest neighbors of a given point, the number of neighbors will be max(kmin, kfrac * nrow(df)).
xmin, xmax	Smallest and largest value of column, used to normalize the x-axis when calculating the area between the eCDFs.

Value

A vector with statistics and p-values

Author(s)

Charlotte Soneson

countsimQC documentation built on Feb. 5, 2021, 2:02 a.m.