API for exomeCopy
Copy number variant detection from exome sequencing read depth
| Global functions | |
|---|---|
| ExomeCopy-class | Man page |
| compileCopyCountSegments | Man page Source code |
| copyCountSegments | Man page Source code |
| countBamInGRanges | Man page |
| emFn | Source code |
| exomeCopy | Man page Source code |
| exomeCopy-package | Man page Man page |
| exomecounts | Man page |
| generateBackground | Man page Source code |
| getGCcontent | Man page Source code |
| logistic | Source code |
| logit | Source code |
| negLogLike | Man page Source code |
| plot,ExomeCopy,missing-method | Man page |
| plot.ExomeCopy | Man page |
| plotCompiledCNV | Man page Source code |
| show,ExomeCopy-method | Man page |
| stFn | Source code |
| subdivide.range | Source code |
| subdivideGRanges | Man page |
| subdivideIRanges | Source code |
| trFn | Source code |
| viterbiPath | Man page Source code |
