exome_bins_from_txdb: extract exome bins for peak calling given a txdb object

In exomePeak2: Bias Awared Peak Calling and Quantification for MeRIP-Seq

Description

extract exome bins for peak calling given a txdb object

Usage

exome_bins_from_txdb(txdb, window_size = 25, step_size = 25)

Arguments

txdb	A txdb object.
window_size	An integer valued number of the width of the sliding windows or bins.
step_size	An integer valued number of the width of the bin steps.

Value

A GRanges object of exonic bins with the names corresponding to the indexes of bins. A metadata colomn named gene_id is attached to indicate its gene ID, which is provided by the txdb object. The gene IDs are divided into multiple ones if the gene contains exons that belong to different chromosomes and strands.

exomePeak2 documentation built on Nov. 8, 2020, 5:27 p.m.