Files in exomePeak2
Bias Awared Peak Calling and Quantification for MeRIP-Seq
README.html
README.md
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
R/format_argg.R
R/exomePeakCalling.R
R/consDESeq2_DM.R
R/plotExonLength.R
R/mclust_bg.R
R/convertTxDb.R
R/GLM_inference.R
R/call_peaks_with_GLM.R
R/AllGenerics.R
R/flank_on_exons.R
R/glmDM.R
R/Allaccessors.R
R/Results.R
R/consDESeq2_M.R
R/reads_five_POS.R
R/exportResults.R
R/plotReadsGC.R
R/ExonPlot.R
R/split_by_name.R
R/plotSizeFactors.R
R/exome_bins_from_txdb.R
R/reduce_peaks.R
R/AllClasses.R
R/plotLfcGC.R
R/replace_bg.R
R/decision_deseq2.R
R/quiet.R
R/normalizeGC.R
R/GC_content_over_grl.R
R/disj_background.R
R/reads_five_POS_rev.R
R/estimateSeqDepth.R
R/scanMeripBAM.R
R/exons_by_unique_gene.R
R/exomePeak2.R
R/ctest.R
R/glmM.R
R/remove_introns.R
vignettes/Vignette_V_0.99.Rmd
man/MeripBamFileList-class.Rd
man/plotReadsGC-methods.Rd
man/flank_on_exons.Rd
man/LibraryType-methods.Rd
man/exons_by_unique_gene.Rd
man/reads_five_POS.Rd
man/quiet.Rd
man/call_peaks_with_GLM.Rd
man/normalizeGC-methods.Rd
man/disj_background.Rd
man/exportResults-methods.Rd
man/reduce_peaks.Rd
man/glmDM-methods.Rd
man/glmM-methods.Rd
man/plotSizeFactors-methods.Rd
man/convertTxDb.Rd
man/split_by_name.Rd
man/scanMeripBAM.Rd
man/ExonPlot.Rd
man/exomePeak2.Rd
man/reads_five_POS_rev.Rd
man/SummarizedExomePeak-class.Rd
man/exomePeak2Results-methods.Rd
man/remove_introns.Rd
man/plotExonLength-methods.Rd
man/exomePeakCalling-methods.Rd
man/plotLfcGC-methods.Rd
man/GC_content_over_grl.Rd
man/exome_bins_from_txdb.Rd
man/decision_deseq2.Rd
man/Results-methods.Rd
man/consDESeq2_M.Rd
man/mclust_bg.Rd
man/GCsizeFactors-methods.Rd
man/GLM_inference.Rd
man/consDESeq2_DM.Rd
man/ctest.Rd
man/Parameter-methods.Rd
man/replace_bg.Rd
man/estimateSeqDepth-methods.Rd
inst/doc/Vignette_V_0.99.Rmd
inst/doc/Vignette_V_0.99.html
inst/doc/Vignette_V_0.99.R
inst/extdata/IP3.bam.bai
inst/extdata/Input1.bam.bai
inst/extdata/Input1.bam
inst/extdata/IP4.bam
inst/extdata/treated_IP1.bam.bai
inst/extdata/sep_ex_mod.rds
inst/extdata/IP4.bam.bai
inst/extdata/Input3.bam
inst/extdata/IP1.bam
inst/extdata/treated_Input1.bam
inst/extdata/sep_ex_dm.rds
inst/extdata/IP3.bam
inst/extdata/Input3.bam.bai
inst/extdata/IP1.bam.bai
inst/extdata/mod_annot.rds
inst/extdata/example.gtf
inst/extdata/treated_Input1.bam.bai
inst/extdata/IP2.bam
inst/extdata/Input2.bam
inst/extdata/treated_IP1.bam
inst/extdata/IP2.bam.bai
inst/extdata/Input2.bam.bai
inst/script/file_documentation
inst/figures/unnamed-chunk-12-1.png
inst/figures/unnamed-chunk-13-1.png
