createAnnotation: Create an annotation dataframe

In flowTime: Annotation and analysis of biological dynamical systems using flow cytometry

Description

Creates a data frame with rows containing the sample names of your flow set that can then be filled in with experimental metadata.

Usage

createAnnotation(yourFlowSet)

Arguments

yourFlowSet

the flowSet to create an annotation data frame for

Value

annotation_df a data frame containing the sample names of your flow set

Examples

dat <- read.flowSet(path = system.file("extdata", "ss_example",
package = "flowTime"), alter.names = TRUE)
annotation <- createAnnotation(yourFlowSet = dat)
head(annotation)

Example output

Loading required package: flowCore
Loading required package: plyr
     name
1 A01.fcs
2 A02.fcs
3 A03.fcs
4 A04.fcs
5 B01.fcs
6 B02.fcs

flowTime documentation built on Nov. 8, 2020, 8:13 p.m.